Comments (2)
I suggested the following fix:
I used the package astropy to automatically cache downloaded files. It defaults to saving the files at /homes/.astropy/cache/, and ideally it should be in one location for each user-session. But I can see how useful it is for the user to be able to make a setting to choose a directory of their choice - I will see about making an openomics configuration file at the user directory, located at ~/.openomics/conf.json.
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Users can now make the setting openomics.set_cache_dir(path="PATH/OF/YOUR/CHOICE/")
which will change the default cache location with https://github.com/BioMeCIS-Lab/OpenOmics/blob/26e2ea4607a3e48f93297abe9f5463ad02c0abe0/openomics/utils/io.py#L18
However, the setting doesn't persist across user sessions. Will implement a ~/.openomics/conf.json
settings file later.
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Related Issues (15)
- AttributeError: '_io.TextIOWrapper' object has no attribute 'startswith' HOT 7
- Reviewer 2 - Installation instructions - Unable to install dependency HOT 2
- Reviewer 2 - Vignette - Unable to `import umap` due to dependencies with scipy on Python 3.9 HOT 2
- Reviewer 2 - Automated tests - Errors with importing dataset in generate_MiRTarBase test HOT 3
- Review 2 - Automated tests - Failed builds in Travis CI HOT 10
- Review 2 - Documentations - Readthedocs documentations should be updated HOT 4
- Reviewer 1 - Documentation HOT 6
- Reviewer 1 - errors using the example code HOT 1
- Reviewer 1 - Installation HOT 2
- Unable to use load_data() for class Multiomics HOT 4
- Test Suite Errors HOT 1
- Bug: MalaCards integration not working because CSV is not working HOT 1
- Request: making OMIM integration
- Initial Update
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