jonathantrine Goto Github PK

book

Compiled and pretty version of labs

cancer-deep-learning-model

Keras Deep Learning neural network model for University of Wisconsin Cancer data that uses the Integrated Variants library to explain predictions made by a trained model

cancer-research-machine-learning

Research work in the area of cancer diagnosis using machine learning with R

cyclops

Cyclic Ordering by Periodic Structure

dentate-granule-cell-model

This detailed and robust compartmental model accompanies the manuscript Beining et al (2017): T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife

gatk

Official code repository for GATK versions 4 and up

genomicdatacommons

Provide R access to the NCI Genomic Data Commons portal.

genomicutilities

icgc_rnaseq_align

msu_ngs2015

DE analysis module for Week3

org-docs

pkg-xppaut

Debian packaging of xppaut

seurat

R toolkit for single cell genomics

soptsc

SOptSC for single cell data analysis

stat-learning

Notes and exercise attempts for "An Introduction to Statistical Learning"

sysbioshortcourse

t2n

T2N is an extension of the TREES toolbox providing an interface between Matlab and the compartmental modeling environment NEURON. It was published in (and should be cited this way): Beining M, Mongiat, LA, Schwarzacher SW, Cuntz H, Jedlicka P: T2N as a new tool for robust electrophysiological modeling demonstrated for mature and adult-born dentate granule cells. eLife 2017; 6:e26517

test_demo

testrepo

this is a test repo

timesignatr

TimeSignature R package

treestoolbox

TREES toolbox

workflow_of_chipseq

R code in workflow of chip-seq analysis