Comments (2)
In line #83, you changed the order of functions in alter_fun_list
. In your case, when you add the copy number layer, the order becomes:
[1] "background" "HETLOSS" "MUT" "GAIN" "AMP"
[6] "HOMDEL"
which means 'GAIN' layer will overlap 'MUT' layer.
add:
# make a subset but still keep the original order
alt = intersect(names(alter_fun_list), alt)
just above line #83 will solve this problem.
from complexheatmap.
YES!! it solved it!!
Thank you so much.
Best,
Massimo
from complexheatmap.
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