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Joe's Projects

caiman icon caiman

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

cell_gui icon cell_gui

A graphical user interface for annotating cells in 3d.

fishexplorer icon fishexplorer

interactive analysis of calcium imaging data from larval zebrafish

greedypy icon greedypy

Greedy weak diffeomorphic image registration in Python

holo_project icon holo_project

Code for holographic optogenetic control of neuron activity - accompanying the paper Dal Maschio, Donovan et. al.

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