Undefined function moveImagesToFolder about msifromhe HOT 3 OPEN

Hi,
I have the same issue.
Did you find a solution @tkrwy ?

Thanks!

from msifromhe.

I used this code last year, as for some time I was reproducing these results: This might give a clue what you can do ... depends how you want to organize your data.

I am not using Matlab anymore, so can't provide a well-tested function, but just to get a clue, you can use/modify it as per your needs

%% COPY IMAGE TILES TO TRAIN AND TEST FOLDERS
mkdir('E:\STAD_MSI_Project\DX_TILES_NORM_SPLIT\TRAIN\MSIMUT')
mkdir('E:\STAD_MSI_Project\DX_TILES_NORM_SPLIT\TEST\MSIMUT')
mkdir('E:\STAD_MSI_Project\DX_TILES_NORM_SPLIT\TRAIN\MSS')
mkdir('E:\STAD_MSI_Project\DX_TILES_NORM_SPLIT\TEST\MSS')
%% now copy the files to the actual folder. This might take a while.
if doCopy
moveImagesToFolder(cliniPatient, allTileNames, msitrain,cnst.tileInputPath,cnst.tileOutputPath,'msitrain')
moveImagesToFolder(cliniPatient, allTileNames, muttrain,cnst.tileInputPath,cnst.tileOutputPath,'muttrain')
moveImagesToFolder(cliniPatient, allTileNames, msstrain,cnst.tileInputPath,cnst.tileOutputPath,'msstrain')

moveImagesToFolder(cliniPatient, allTileNames, msitest,cnst.tileInputPath,cnst.tileOutputPath,'msitest')
moveImagesToFolder(cliniPatient, allTileNames, muttest,cnst.tileInputPath,cnst.tileOutputPath,'muttest')
moveImagesToFolder(cliniPatient, allTileNames, msstest,cnst.tileInputPath,cnst.tileOutputPath,'msstest')
end

function moveImagesToFolder(cliniPatient, allTileNames, patientSet,tileInputPath,tileOutputPath, setStr)

% if strcmp(setStr, 'msitrain') || strcmp(setStr, 'muttrain')
% moveTo = [tileOutputPath, 'TRAIN\MSIMUT'];
% end
% if strcmp(setStr, 'msitest') || strcmp(setStr, 'muttest')
% moveTo = [tileOutputPath, 'TEST\MSIMUT'];
% end
% if strcmp(setStr, 'msstrain')
% moveTo = [tileOutputPath, 'TRAIN\MSS'];
% end
% if strcmp(setStr, 'msstest')
% moveTo = [tileOutputPath, 'TEST\MSS']';
% end

moveTo = 'E:\STAD_MSI_Project\DX_TILES_NORM_SPLIT\TEST\MSS';

lin_ind = find(patientSet == 1); % whether msitrain, msitest or else*
for i=1:length(lin_ind)
currPat = cliniPatient{lin_ind(i)};
matchedTiles = find(contains(allTileNames,currPat) ==1); % match all tiles
tot_tiles = length(matchedTiles);
for j=1:tot_tiles
moveIt = allTileNames{matchedTiles(j)};
moveItFrom = [tileInputPath, moveIt];
movefile(moveItFrom, moveTo)
end
end
end

from msifromhe.

Thank you for your insight @mbhahsmi !

from msifromhe.