Comments (2)
So what's the best way currently. Going through ipython console. Also, just save the affine or use something like pybdv
to save both layers and their affine transforms?
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Currently I've only ever played with it so haven't saved anything. But yes, going through the console will get you there for now.
My current plan was to add an output folder selection widget, and have the affine matrix saved as ref-layer-name--moving-layer-name--affine.txt
or something similar. Alternative suggestions are most welcome!
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Related Issues (20)
- Task: Allow aligning non-image layers
- wheel building broken?
- Task: add tests for non-image alignment
- GitHub actions and Trove classifiers should be updated to drop Py3.7 and add Py 3.10
- refresh available layers in dropdown HOT 1
- Transformation matrix with skimage.transform.warp HOT 5
- why not make the description the readme? HOT 10
- Should add sample data
- Change docs theme to Pydata Sphinx theme
- Improve documentation, explaining how affinder works
- Add documentation URL to repo description HOT 1
- Extend affinder to 3D HOT 2
- Widget idea: table showing current point coordinates and residuals for each point HOT 6
- Adding layers with small scale values results in absurdly large points
- Starting affinder without layers causes Napari to crash
- apply_affine does not correctly transform images for scales<1 HOT 2
- Limit "Select File" button for output to .txt files
- Need ability to undo point adding and effect of callbacks
- Closing the widget should close affinder
- Add test to ensure moving points layer have the correct affine transform
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