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10x_2nd_analysis_shinyapp

Build a shiny application using Docker

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

bios-699-analysis-of-biostatistical-investigations

University of Michigan Department of Biostatistics course

biostat.675

Repository for BIOSTAT 675: Survival Analysis

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

cellranger

10x Genomics Single Cell Analysis

chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

crc_scrnaseq

ecotyper

EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.

eecs402

EECS402 C++

eecs545_project_delan

hts-python

pythonic wrapper for htslib

humanpdac

single cell analysis of treatment naive and treated human PDAC

imageai

A python library built to empower developers to build applications and systems with self-contained Computer Vision capabilities

imputationserver

TOPMED Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity

keras

Deep Learning for humans

lasir_paper_code

machine-learning

machine-learning-interview-questions

This repository is to prepare for Machine Learning interviews.

mcmicro

Multiple-choice microscopy pipeline

merfish_analysis

Matlab software for the analysis of MERFISH data and the construction of MERFISH probes.

mmrf_commpass

A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.

nilearn

Machine learning for NeuroImaging in Python

nipy

Neuroimaging in Python FMRI analysis package

nipype

Workflows and interfaces for neuroimaging packages

node-oracledb

Oracle Database driver for Node.js maintained by Oracle Corp.

oracle-db-tools

This project is a repository of sample code that will demonstrate various concepts to assist developers in building applications around Oracle Database technologies. SDKs and scripts will be available to integrate with SQL Developer, Data Modeler, Oracle REST Data Services and DBaaS.

pdac

pheweb

A tool to build a website to browse hundreds or thousands of GWAS.