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Joshua Lerman's Projects

cameo icon cameo

cameo - computer aided metabolic engineering & optimization

cobrame icon cobrame

A COBRApy extension for genome-scale models of metabolism and expression (ME-models)

cobrapy_main icon cobrapy_main

COBRApy is a package for constraints-based modeling of biological networks

ecolime icon ecolime

Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression

escher icon escher

Build, view, share, and embed metabolic maps.

evseq icon evseq

Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.

keras icon keras

Deep Learning library for Python. Convnets, recurrent neural networks, and more. Runs on Theano or TensorFlow.

mutation_maker icon mutation_maker

Application for mutagenic primer design. Facilitates development of biocatalysts (Green Chemistry) and new therapeutic proteins.

optlang icon optlang

optlang - sympy based mathematical programming language

pydna icon pydna

Double stranded DNA & simulation of homologous recombination, Gibson assembly, cut&paste cloning in Python and Jupyter notebooks

pyms icon pyms

Automatically exported from code.google.com/p/pyms

pyms-docs icon pyms-docs

Automatically exported from code.google.com/p/pyms-docs

pyms-test icon pyms-test

Automatically exported from code.google.com/p/pyms-test

ucsd-thesis icon ucsd-thesis

an effort to create the canonical LaTeX style for typesetting UCSD doctoral dissertations

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