Comments (6)
How big of dataset do the tests require? If For data in the ~10-100 kilobyte range including the file directly in the repository in a data folder should be fine. Larger datasets could be stored in a nmrglue_data repository or as a release artifact which has a 2GB upper limit.
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The additional datasets are themselves relatively small at ~2.5MB (out of which a single 2D is ~2MB). That is still bigger than the nmrglue codebase (!), but I am testing the ability to read and write processed 2D datasets from and into the bruker format which makes smaller sizes a bit difficult. For the current testing requirements, I will make smaller datasets to fit into the data folder tests in fileio
and/or change some tests.
However, I think it would be great to have a way to update the test_data_v0.4-dev.zip on google-code archive and run the more extensive tests, atleast locally.
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@jjhelmus and @JLVarjo I am unable to find the testing data for testing PR #120. the test_data_v04-dev.zip file from above is missing jcampdx datasets. Any idea where I can find these?
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Hi,
I have it and @jjhelmus should have it, but it seems that this test data archive is not updated. I think this data is not more than few megabytes. Should I upload them to the nmrglue_data repo maybe?
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Maybe you can email it to me for now? We probably should revisit how/where we store these test datasets. It might be best to avoid adding to the repo for now, as most of the datasets will be be larger than than current repo size.
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I agree - it would simplify pushing bug fixes if test data could be made instantly available as well. I'll get back to you next monday and e-mail the data.
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Related Issues (20)
- Installation fails with setuptools v61.2.0 HOT 2
- Import error - scipy version 1.8.0 HOT 1
- integrate_2d: how to get limits.in? HOT 2
- Problem with 1D plotting - maybe HOT 3
- Failed to load Bruker Data HOT 2
- Give up on Python 3.6 HOT 1
- Process_pipe_3d:There seems to be some issues with the processing script HOT 13
- nmrglue fails loading due to scipy.minpack deprecation (1.9.3) HOT 2
- Does the spectral raw data obtained by 'Echo-Antiecho', 'States', 'TPPI' and 'States-TPPI' require additional manual operations? HOT 2
- ng.analysis.peakpick.pick() generating deprecation warning due to np.float() HOT 3
- Suggestion: nmrglue/fileio/SPINit.py
- Issue when trying to convert Varian data to Pipe HOT 2
- How to Process and display multiple 1D Bruker data HOT 3
- Port tests away from nose HOT 2
- New release HOT 4
- Help plotting Bruker 2D spectra HOT 3
- Issue with ng.peakpick.pick for "thres" and "thres-fast" algorithms with Numpy ^v1.22 HOT 2
- Peak picking from a 2D contour plot HOT 1
- Reading JEOL NMR Data (*.jdf) HOT 2
- Roll data and update unit conversion object HOT 1
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