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23andme_report

Generate a HTML report for 23andme data

admix

an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

atacproc

ATAC-seq processing pipeline

atlas_of_human_heart_failure_lavine

Scripts used to generate the data/figures contained in "Single Cell Transcriptomics Reveals Cell Type Specific Diversification in Human Heart Failure"

baf-kinetics

Code used for the analyses of the paper Acute BAF perturbation causes immediate changes in chromatin accessibility

brca_cell_atlas

Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".

cadd

Material for Computer-Aided Drug Design classes BSR3101

cytofcompensation

Companion repository for the paper 'Compensation of signal spillover in suspension and imaging mass cytometry'

exac_2015

Companion repo for ExAC paper, 2015

gnomad_lof

heart_regeneration

imcsegmentationpipeline

A pixelclassification based multiplexed image segmentation pipeline

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

intro-to-chipseq

Intro to ChIPseq using HPC

labs

Scripts for PH525x: Data Analysis for Genomics

lihang_book_algorithm

致力于将李航博士《统计学习方法》一书中所有算法实现一遍

nvim-r

Vim plugin to work with R

pancaf

rnaseq-training

Hands-On training 2015

scpathology_publication

The Single-Cell Pathology Landscape of Breast Cancer

spatialscore

R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in cutaneous T cell lymphoma".

structure-based_docking

Scripts to do docking, single virtual screening, and etc.

teachopencadd

TeachOpenCADD: a teaching platform for computer-aided drug design (CADD) using open source packages and data

tnbc_scrnaseq

vcf2maf

Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms