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ampliseq

16S rRNA amplicon sequencing analysis workflow using QIIME2

anglecam

d1_d2_scripts

Scripts and other material relevant to estimating the D1 and D2 introgression statistics (see Hibbins & Hahn 2019, Genetics).

gfastats

A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.

ggstatsplot

Enhancing {ggplot2} plots with statistical analysis 📊📣

jaltphylo

Raw scripts for the Jaltomata phylogenomics project. Publication: Wu, M., Kostyun, J. L., Hahn, M. W., & Moyle, L. C. (2018). Dissecting the basis of novel trait evolution in a radiation with widespread phylogenetic discordance. Molecular Ecology, 27, 3301-3316.

orthofinder

Phylogenetic orthology inference for comparative genomics

permute

permutation tests and confidence sets

rcrashcourse_book

A GitBook version of the R Crash Course self-tutorials: https://colauttilab.github.io/RCrashCourse

speciation_scripts

Scripts for analysis used for speciation genomics

statistical-rethinking

A repository for working through the Bayesian statistics book "Statistical Rethinking" by Richard McElreath.

tutorials

Tutorials on phylogenetic and phylogenomic inference

zelle-python

My solutions to the well know Introduction to Computer Science with Python book by John Zelle. Several years after going through this book, I still recommend it as one of the best examples of computer science pedagogy I've seen to date.