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abcjs

javascript for rendering abc music notation

adaptive-sampling-old

A Python framework to run adaptive Markov state model (MSM) simulation on HPC resources

adaptivemd

A python framework to run adaptive Markov state model (MSM) simulation on HPC resources

assaytools

Python tools for the modeling and Bayesian analysis of fluorescence assays

command-center

Home of the ChoderaLab status monitor

conda-build

Commands and tools for building conda packages

conda-recipes

conda build recipes for the Omnia project

eve

Better tools for thought

fahmunge

Tools for Munging Folding@Home datasets

hls.js

JavaScript HLS client using Media Source Extension

htmd

High throughput molecular dynamics simulations

ipynb-test

A simple tool for testing ipython notebooks (.ipynb) files

ipythonql

Quicklook plugin for ipython notebooks

itctools

Tools for setting up ITC experiments in an automated fashion using the Tecan EVO and Auto-iTC 200.

kale

A (healthy) templating engine for your JSON data.

leapparticle

A Processing demonstration app for particle dynamics using LeapMotion control.

markovstatemodel.m

A Mathematica package for Markov state models (MSMs)

mdtraj

A modern, open library for the analysis of molecular dynamics trajectories

node-progress

Flexible ascii progress bar for nodejs

onion

Find TIS layers from MSM in dynamical systems

oompy

A python package that implements usage of Observable Operator Models and associated learning algorithms.

openmm-cmd

OpenMM Command Line Application

openmmtools

Test systems for OpenMM

openpathsampling

Explorations of ways to combine MSMs with TIS

paperstyle.m

A Mathematica package for enhanced plot styles

projectmanagement.m

A Mathematica package for project based folder management

pyemma

Markov state model algorithms

pythonflaskmysqlapp---part-1

qlnetcdf

A QuickLook Plugin for previewing NetCDF files.

radical.pilot

RADICAL-Pilot