Jared Galloway's Projects
Analysis of inference methods on standard population models using Snakemake
automatic/analytical differentiation benchmark
A place for my three internship reports to live.
demultiplexing-jgallowa07 created by GitHub Classroom
Dotfiles and automagic set-up scripts for Linux flavours
This repository will contain the necessary scripts and computational benchmarks for the assembly of the King Crab.
This is the source code for a muti-threaded file crawler written in c using p threads.
a python module for calculating microbial correlation matrices that account for habitat filtering effects
Testing out uploading to pyPI
A fun simple game that lets the user or a file 'create' command to make a world (required first), Humans, Robots, Waypoints, and fires. Use move, go, and attack to take out the fires and move.
A place for Individual Development Plan
individual career development plan
a source - sink hierarchy takes in PNM files, applies filters by directly manilating each pixel.
PopSim consortium manuscript
A simple CLI to draw motif plots given a fasta and motif file.
A reimplementation of Hudson's classical ms simulator for modern data sets.
A modified ncov nextrain build to include dms model predictions'
This repository will hold code and other documents for doing image analysis (deep learning) to identify specific neurons.
A small example of how to start building a nextflow pipeline.
B-cell repertoire and clonal family tree explorer
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
A portfolio for my CV / Resume / example figs ect.
Tools for dealing with tree sequences coming to and from SLiM.
Recombination Landscape Estimation using Recurrent Neural Networks
A place to be a *little* self-centered.
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This is a model of a round robin CPU scheduler. It takes in a number of commands as an argument, forks off children processes to exec the given command in a round robin scheduling fashion