jfq3 Goto Github PK
Type: User
Company: Michigan State University
Location: East Lansing, MI, USA
Blog: john-quensen.com
jfq3's Projects
auxillary-xander-scripts
Scripts to aid post-processing of Xander results and adding new gene capability.
co-occurrence
R scripts for performing co-occurrence analyses
constax
Evaluation of robustness of common microbiome taxonomic classifiers. Here we present a set of tools and softwares to perform a systematic comparison of commonly used fungal ITS classifiers and databases with the aim to improve taxonomic classification of environmental sequence reads.
data_sets
devtools
Tools to make an R developer's life easier
dummy_book
figaro
An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters
ggordiplots
Make ggplot Versions of Vegan's Ordiplots
ggplot_adventcalendar
A 25-day advent calendaR providing an introduction to ggplot2!
global-bacterial-diversity-in-wwtps
jhustatcomputing2022
Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2022
jhustatprogramming2022
Course website for Biostat 840 in Fall 2022
marky-coco
Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes
megagta
HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
metabolic-1
A scalable high-throughput metabolic and biogeochemical functional trait profiler
metawrap
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
miga
MiGA: Microbial Genomes Atlas
miga-aws
How to use the MiGA AMI on AWS.
miga-docker
MiGA for everyone!
miga-plus
Auxiliary plots and analyses for MiGA
miga-web
Documentation for the web-based version of the Microbial Genome Atlas
miga_singularity
miscellaneous-scripts
neutralmodel
nst
:exclamation: This is a read-only mirror of the CRAN R package repository. NST — Normalized Stochasticity Ratio
open-website
This repository is used for Git and GitHub training
pfam-get-hmm
To download HMM models from Pfam
phonetic-website
This repository is used for Git and GitHub training.
phylogenomicsworkflow
A workflow to generate a phylogentic tree with your Genomes
python_3_scripts
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