Name: Jesper Madsen
Type: User
Company: University of Southern Denmark
Bio: Molecular biologist turned computational biologist. Interested in transcriptional regulation and metabolic diseases.
Twitter: jespergrud
Location: University of Southern Denmark, Odense, Denmark
Blog: https://madsen-lab.github.io/
Jesper Madsen's Projects
🐟 🔬🦀 alevin-fry is an efficient and flexible tool for processing single-cell sequencing data, currently focused on single-cell transcriptomics and feature barcoding.
Clustering on Network of Samples
This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
Gene-level general linear mixed model
Scalable integration of single cell RNAseq data for batch correction and meta analysis
MACS -- Model-based Analysis of ChIP-Seq
Scripts for analysis of primary and supplementary snRNA-seq datasets from epididymal white adipose tissue from lean and obese mice.
TRAjectory-based Differential Expression analysis for SEQuencing data
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs