Comments (9)
jrowen
commented on June 9, 2024
According to this page, it appears that CURLOPT_GSSAPI_DELEGATION was added in libcurl 7.22.0, so I'm wondering if this could be a version error.
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jeroen
commented on June 9, 2024
Hmmm. Do you have multiple versions of libcurl installed on the machine? Can send me the file /usr/include/curl/curl.h ?
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jeroen
commented on June 9, 2024
The script should automatically find available options via https://github.com/jeroenooms/curl/blob/v0.4/configure#L15.
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jrowen
commented on June 9, 2024
I'll send the file to your stat.ucla.edu email address shortly. No luck with the script:
line 15: src/option_table.h: No such file or directory
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jeroen
commented on June 9, 2024
The option_table.h file gets generated when you run configure. It looks as if you might have another version of curl.h somewhere on your system?
I just added a line to the configure script that prints the path of curl.h when installing the package. Can you try again:
devtools::install_github("jeroenooms/curl")And see what curl path it reports? E.g. Found libcurl in...
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jrowen
commented on June 9, 2024
Below is the updated output, which shows curl.h in the location you specified. I also ran a search for curl.h and did find two versions of the file on the machine.
$ find / -name curl.h 2>/dev/null
/usr/local/include/curl/curl.h
/usr/include/curl/curl.h
I'll remove a version and see if that resolves the error.
> devtools::install_github("jeroenooms/curl")
Downloading github repo jeroenooms/curl@master
Installing curl
'/usr/lib64/R/bin/R' --vanilla CMD INSTALL \
'/tmp/Rtmpm1KYhi/devtools33c68416980/jeroenooms-curl-37044c2' \
--library='/opt/Rapp/jrowen/R/x86_64-redhat-linux-gnu-library/3.1' \
--install-tests
* installing *source* package ‘curl’ ...
Found libcurl in /usr/include/curl/curl.h
** libs
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c curl.c -o curl.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c download.c -o download.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c escape.c -o escape.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c options.c -o options.o
In file included from options.h:15,
from options.c:3:
option_table.h:168: error: ‘CURLOPT_GSSAPI_DELEGATION’ undeclared here (not in a function)
make: *** [options.o] Error 1
ERROR: compilation failed for package ‘curl’
* removing ‘/opt/Rapp/jrowen/R/x86_64-redhat-linux-gnu-library/3.1/curl’
Error: Command failed (1)
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jrowen
commented on June 9, 2024
As you surmised, this error was caused by a second version of curl.h on the machine. After removing the second version, the installation was successful. Thanks for the suggestions.
> devtools::install_github("jeroenooms/curl")
Downloading github repo jeroenooms/curl@master
Installing curl
'/usr/lib64/R/bin/R' --vanilla CMD INSTALL \
'/tmp/Rtmpm1KYhi/devtools33c1e7771a8/jeroenooms-curl-37044c2' \
--library='/opt/Rapp/jrowen/R/x86_64-redhat-linux-gnu-library/3.1' \
--install-tests
* installing *source* package ‘curl’ ...
Found libcurl in /usr/include/curl/curl.h
** libs
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c curl.c -o curl.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c download.c -o download.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c escape.c -o escape.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c options.c -o options.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c utils.c -o utils.o
gcc -m64 -std=gnu99 -I/usr/include/R -DNDEBUG -I/usr/local/include -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -c version.c -o version.o
gcc -m64 -std=gnu99 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o curl.so curl.o download.o escape.o options.o utils.o version.o -lcurl -L/usr/lib64/R/lib -lR
installing to /opt/Rapp/jrowen/R/x86_64-redhat-linux-gnu-library/3.1/curl/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
converting help for package ‘curl’
finding HTML links ... done
curl html
curl_download html
utilities html
** building package indices
** testing if installed package can be loaded
* DONE (curl)
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jeroen
commented on June 9, 2024
OK great. Do you know where the second version came from? Did you build libcurl manually?
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jrowen
commented on June 9, 2024
The second version was in the /usr/local/include/curl. We used yum to install libcurl, so I'm not sure how the other version was installed. It may have been part of the base image we're using.
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