jennomics Goto Github PK

2015-07-01-esu

fake workshop website

amazon-ebs-autoscale

Don't run out of disk space on your EC2 instance when generating or working with large files. Automatically add EBS volumes to a filesystem mount point in response to disk utilization.

aws-genomics-workflows

Genomics Workflows on AWS

blast-example

A basic blast pipeline using nextflow

cumulus

demo-genomics-workflow-wdl

gatk

Germline Variant Calling Nextflow Pipeline Based On GATK4 Best Practices

gatk-sv

github.io

repository to host IPython notebook for microbial ecology with QIIME

instructor-training

Software Carpentry instructor training course

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

marchworkshop

Microbial Community Analysis

mpgap

Multi-platform genome assembly pipeline

parallel-blast

simple nextflow script to parallelize a blast search on AWS

pipeline

tmp repo for MB3

qiimebyjennomics

IPython notebook for microbial ecology analysis in QIIME

quickstart-biotech-blueprint

AWS Quick Start Team

quickstart-nextflow

AWS Quick Start Team

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sarek

Analysis pipeline to detect germline or somatic variants from WGS / targeted sequencing

scrnaseq

A single-cell RNAseq pipeline for 10X genomics data

seurat_on_aws

sagemaker notebook for scRNA analysis

single-cell

Pipelines and scripts for single-cell best practices

swc_remote_lang

tui.editor

🍞📝 Markdown WYSIWYG Editor. GFM Standard + Chart & UML Extensible.

verbose-system

workflowpaper

This is the undergrad swab to genome announcement manuscript