Related Issues (16)
- Make popStruct handle genome data errors
- Add Testing for seqGRM and seqPCA
- Improve test cases for grmCalc HOT 1
- Update Package to be Compatible with SeqArray
- Check that missing values are properly handled if the missingness filter is not used HOT 1
- NA Triggers Errors in checkMAF function
- Draft a test case to verify that missing data is properly ignored in calculations
- Automatically Remove Monomorphic and Singleton Loci
- Add a MAF filter argument to popStruct
- Add Method to Restrict Dataset to a Subset of the Data Based on Allele Frequency
- Make the # of Loci to read in a parameter
- Fix SNP filtering functions
- Make seqPCA return the sample id's even when a sample id argument isn't used
- Return the actual SNPs used to calculate the GRM
- Allow non-Beta Weights
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