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ashr

An R package for adaptive shrinkage

bigsnpr

R package for the analysis of massive SNP arrays.

biost_881_causal_inference

https://jean997.github.io/BIOST_881_causal_inference/

bvashr

cause

R package for CAUSE

causesims

R package for creating simulated summary statistics and testing MR methods

cfdrsims

dplyr

dplyr: A grammar of data manipulation

ebnm

R package to fit Empirical Bayes Normal Means model.

esmr

Empirical Shrinkage Mendelian Randomization

flashier

A faster and angrier package for EBMF. In progress.

fret

gfa_pipeline

Snakemake pipeline for running GFA

gwas_file_tracker

Some utilities for tracking downloaded GWAS summary statistics

ibdsims

Code for running simulations in Morrison, Jean (2013). “Characterization and correction of error in genome-wide ibd estimation for samples with population structure”, Gen. Epi

jadesims

jadetf

R package for Joint Adaptive Differential Estimation (JADE)

jean997.github.io

Jean Morrison's website

mr-presso

Performs the Mendelian Randomization Pleiotropy RESidual Sum and Outlier (MR-PRESSO) method.

mrmn_sims_prototype

multiple_testing_lecture

https://jean997.github.io/multiple_testing_lecture/multiple_testing.html

rcc

rccsims

R package for running simulations in "Rank conditional coverage and confidence intervals in high dimensional problems" by Jean Morrison and Noah Simon

rr_tools

A Website Aggregating Tools and Tips for Reproducible Data Science Research

simgwas

Simulate GWAS data from an arbitrary DAG

simulations_lecture

https://jean997.github.io/simulations_lecture/simulations.html#1

sumstatfactors

Working package for GFA project (in development)

survival_lab

https://jean997.github.io/survival_lab/survival_lab.html#1