jdrubin91 Goto Github PK
Name: Jonathan D. Rubin
Type: User
Jonathan D. Rubin's Projects
bidirectionaltfanalyzer
Takes in bidirectional sites and a directory of TF ChIP peak calls and runs analysis pipeline
chipmodel
Takes in ChIP raw data and ChIP peak calls to define normal and uniform parameters
codeclub
Collected Resources for Dowell Lab Code Clubs
deseq_run
folder-structure-conventions
Folder / directory structure options and naming conventions for software projects
fstitch
An algorithm to detect nascent RNA transcription in GRO-seq and ChIP-seq
genelab-microarray
Standardized processing pipeline for microarray data on GeneLab
genomescan
Scans a genome for motif hits using FIMO
genomicfeatures
Tools for making and manipulating transcript centric annotations
groanalysis
groseqencode
gtfi
histone_overlap
map
meme_run
Runs MEME and TOMTOM on a set of intervals, returns enriched TF motifs
metabolon_analysis
multidataanalysis
This package multiple datasets originating from different -omics techniques into a single analysis.
read_p53
rnapiichip_analysis
steinparzer2018
This repository contains scripts related to MD-Score analysis completed for the publication Steinparzer et al. 2018
svm_analysis
workshop
workshop2
This is a package
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