jdidion Goto Github PK

.github

Default community-health files for my repos

atropos

An NGS read trimming tool that is specific, sensitive, and speedy. (production)

atropos-multiqc

MultiQC plugin for Atropos. (beta)

audiodrama

My audio drama feeds OPML

autoclick

Create Click-based CLIs from python3 type annotations (beta)

awesome-nextflow

A curated list of nextflow based pipelines

bioconda-recipes

Conda recipes for the bioconda channel.

biotools

A list of useful bioinformatics resources

blockmute

Use the twitter API to block muted IDs, and vice-versa

bookmark-cleaner

migrate from Chrome bookmarks to Raindrop

bwa-meth

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome

bwa-postalt-rs

Reimplementation of BWA alt-aware post-processing in Rust

cachier

Persistent, stale-free, local and cross-machine caching for Python functions.

career-ladder

Framework for creating career ladders

clasp

Cell Line Authentication by SNP Profiling (CLASP). (production)

clicktypes

Create Click CLIs with type annotations (Moved -> AutoClick)

cwl-v1.2

Released CWL v1.2 specification

cwljava

Java SDK for CWL

cwltool

Common Workflow Language reference implementation

deutils

Utilities for differential expression testing. (beta)

developments-in-next-generation-sequencing

Developments in next generation sequencing: instruments, read lengths, throughput. See

docparse

Parse python docstrings (beta)

driver

Generic base class for batch programs. (unsupported)

dx_app_builder

Apps to build your app/applet/asset from source in a containerized environment.

dxcompiler-compile-action

A GitHub action to compile a WDL workflow using dxCompiler

dxwdl-action-test

fancyplots

Some useful plots for genomic data, in base R. (beta)

fastq-vs-ubam

Compare speed of FASTQ vs uBAM for various applications

feedme

A simple, flexible, and extensible RSS and Atom parser for Ruby. Based on the popular SimpleRSS library, but with many nice extra features. (retired)

fubar

Fun with Bioinformatics Algorithms in Rust