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Name: Judit Burgaya Ventura

Type: User

Company: Twincore, MHH

Bio: PhD student in microbial genomics

Twitter: juditburgaya

Location: Hannover, Germany

Blog: https://jburgaya.github.io/

About me

I am a doctoral researcher and PhD student in computational modeling of bacterial populations in the Microbial Pangenomes Lab at the TWINCORE - Center for Experimental and Clinical Infection Research, a joint venture between the Hannover Medical School (MHH) and the Helmholtz Center for Infection Research (HZI) in Germany.

⚡ My research interests are: microbiology bioinformatics antimicrobial resistance genomic epidemiology between-host transmission within-host evolution
🌱 I am currently learning: temporal graph networks german language
😄 Some of my hobbies are: roller hockey tennis hiking and now I am getting into running

Skills

Connect with me

Judit Burgaya Ventura's Projects

2021_ecoli_pathogenicity

Bacterial GWAS for E. coli BSI genetic determinants

2022_ecoli_commensal

Bacterial wg-GWAS for the detection of E. coli BSI and commensal genetic determinants

2023_kpneumo_transmission

2023 gwas on the transmission of K. pneumoniae strains in hospital settings

2023_pseudomonas_gwas

adventofcode2023

Winter is coming

amr_figures

Dataset figures

article_microti

Experimental Mycobacterium microti infection in bank voles (Myodes glareolus)

bactcovidata

Scripts to download, filter and visualise the data for the project

bioinf_scripts

Useful scripts for bioinformatics purposes

chibio

Retrieve fasta sequences containing genes of interest

clermontyping

Clermont PCR method In-Silico

code

Compilation of R and Python programming codes on the Data Professor YouTube channel.

codeclub_labretreat

Create a Muller plot of Kpneumoniae ST

covid-policy-tracker

Systematic dataset of Covid-19 policy, from Oxford University

fasttranscluster

generative_art_tsne

genomebact

A pipeline for bacterial assembly and annotation

jburgaya

jburgaya.github.io

This is my personal portfolio website

klebsplasmids

Using plasmidfiner on the klebs dataset and investigating plasmid presence/absence taking into account patiet id and sampling date

poppipe

Population analysis PIPEline 🛠🧬

poppunk

PopPUNK 👨‍🎤 (POPulation Partitioning Using Nucleotide Kmers)

python-mastery

Advanced Python Mastery (course by @dabeaz)

ro_prediction_network

Scripts used to plot the figures for the PhD intermediate exam presentation.

tenet

From assemblies to transmission events networks

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