janetmatsen Goto Github PK

2014_software_carpentry_course

2014_Software_Carpentry_Course from UW class

aws_myria

CSE 544 (Database) genomics/oceanography Myria homework using AWS

aws_parallel_cowsay

spin up multiple instances to execute cowsay in parallel

bacteriopop

population dynamics for abundances calculated from meta-omics sequencing

biostat-578

A repository for all of my teaching material

cca_omics

Cannonical Correlation Analysis for Metatranscriptomics in the Lidstrom Lab

cse_512_a3

interactive visualization of ... something... in D3

decision_tree_vis_in_d3

test of extracting scikitlearn decision trees and visualizing them in d3

docker-react-practice

practice Docker + AWS Elastic Beanstalk

dotfiles

elvizanalysis

Code for analysis of Elviz-digested metagenomic data.

erick

Erick's blog

escher.github.io

The Escher website.

machine-learning

Notes from CSE 446, Winter 2016

machine_learning_cse_546

Notes & solutions for https://courses.cs.washington.edu/courses/cse546/16au/

meta4

environmental metagenomics and metatranscriptomics

meta4_bins

meta-omics experiment #4: mapping to genome bins

meta4_bins--old

meta-omics experiment 4 mapping to genome bins

meta4_bins_janalysis

Janet's analysis folder for meta4_bins, allowing for a shared remote meta4_bins repository with DAve

ml_meta-omics

Machine Learning for uncovering microbial metabolic cooperation (class project for CSE 546)

multi-container-docker

practicing multi-container docker deployments on AWS Elastic Beanstalk

multi-k8s

neo4j_meta4

Exploring partial correlation matrix from the meta-omics experiment 4 with Neo4j.

plasmids

plotting_python

document control of plotting in python using matplotlib, pandas, and seaborn

probability_cheatsheet

My Statistics notes, prepended to an existing cheat sheet.

protocols

Protocols used in my PhD thesis.

statistics_for_data_science

Statistics review cheat-sheet for data science

thesis

PhD thesis: chemical engineering + microbiology + data science