Code Monkey home page Code Monkey logo

James Jensen's Projects

alignment icon alignment

global alignment with affine gap penalties. For aligning text or character sequences.

als_factorize icon als_factorize

Code for alternating least squares factorization. For imputation/recommendation, dimensionality reduction, etc.

bayesnet icon bayesnet

Utilities for working with Bayesian networks; some for DAGs in general

bayesnmf icon bayesnmf

Bayesian non-negative matrix factorization (Schmidt et al. 2009), with Gibbs sampling and ICM algorithms for model fitting, and Chibs' method for estimating marginal likelihood.

bipartite_permute icon bipartite_permute

fast permutation of binary matrices preserving degree (i.e. row and column sums)

cca icon cca

canonical correlation analysis

correl_info icon correl_info

Correlation informativeness metrics and denoising from Brockmeier et al. 2017

glmnet icon glmnet

scikit-learn compatible glmnet wrapper. Uses rpy2

gsea icon gsea

Gene set enrichment analysis or GSEA (Subramanian et al. 2005), and single-sample GSEA (Barbie et al. 2009)

information icon information

information-theoretic measures of statistical dependence

nmf_utils icon nmf_utils

Utilities for non-negative matrix factorization with scikit-learn or similar interface

tobit icon tobit

Simple Tobit regression in python

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.