interseted_TFs about bitfam HOT 3 CLOSED

Hi,
Thank you for using our tool!
What is the error you have? Currently, IRF7 is not in the TF ChIP-seq database. So you cannot do the inference on IRF7. If you have IRF7 ChIP-seq data or IRF7 target gene list, you can put it into the extdata folder. Please let me know if you need more help!

from bitfam.

Hi - thank you for the response. Answers below.

This is the initial error:

Error in BITFAM(data = data_matrix_normalized, interseted_TF = c("IRF3", :
unused argument (scATAC_obj = NA)

After removing scATAC_obj = NA and rerunning:

Error in if (is.na(interseted_TF)) { : the condition has length > 1

I suspect because of what you said about IRF7 - it runs after removing IRF7 - thanks!

from bitfam.

Hi @sgao30, I think the above problem is related to this issue #16 I posted last year. I guess the checking for NA in interseted_TF throws an error if interseted_TF is a vector of elements. Would be nice to fix the checking of NAs so we can input multiple TFs of interest.

Thank you!

from bitfam.