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Name: Jakob Zerbs

Type: User

Company: University of Waterloo

Bio: Systems Design Engineering Student and aspiring Data Scientist with diverse ML and Data experiences across various industries and countries.

Location: Waterloo, ON

Jakob Zerbs's Projects

chess icon chess

Comparison of Hi-C Experiments using Structural Similarity.

deephic icon deephic

A GAN-based method for Enhancing Hi-C data

deeploop icon deeploop

DeepLoop robustly identifies enhancer-promoter interactions from low-depth and single-cell Hi-C data

multihiccompare icon multihiccompare

Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.

neoloopfinder icon neoloopfinder

A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes

tadbit icon tadbit

TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FASTQ files to obtain raw interaction binned matrices (Hi-C like matrices), normalize and correct interaction matrices, identify and compare the so-called Topologically Associating Domains (TADs), build 3D models from the interaction matrices, and finally, extract structural properties from the models. TADbit is complemented by TADkit for visualizing 3D models

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