jajcobyang Goto Github PK

archr

ArchR : Analysis of Regulatory Chromatin in R (www.ArchRProject.com)

bioc2020trajectories

Trajectory inference and differential expression over multiple conditions in scRNA-seq

cellchat

R toolkit for inference and analysis of cell-cell communication from single-cell data

celltalker

Inference of cell-cell communication from single-cell RNAseq data

cheatsheets

RStudio Cheat Sheets

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

damage_repair

Genome-wide DNA damage and excision repair maps

enrichplot

Visualization of Functional Enrichment Result

ggmsa

:traffic_light: Visualizing pubication-quality multiple sequence alignment using ggplot2

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

hopr

This is the development site for Hands-On Programming with R, a book that teaches how to program in R, with hands-on examples. Read the book at https://rstudio-education.github.io/hopr.

ihcount

IHC-image analysis workflow

mc3_icgc_variant_pipeline

Variant analysis pipeline to compare the public PCAWG and MC3 mutation files generated by ICGC and TCGA

methy_array

microbiotaprocess

nextflow

A DSL for data-driven computational pipelines

oscabase

Single-cell-related content for the OSCA Book.

pmbio.org

Website for the precision medicine workshop

pseudospace

scell_lung_adenocarcinoma

This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset

scrnaseq-analysis-notes

scRNAseq analysis notes from Ming Tang

seurat-data

Dataset distribution for Seurat

sscclust

simpler single cell RNAseq data clustering

startrac

STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)

xcell

Cell types enrichment analysis