Code Monkey home page Code Monkey logo

Ivory's Projects

biolockj icon biolockj

BioLockJ is an automated metagenomics pipeline for WGS/16s sequence analysis. The extensible Java framework writes/executes bash scripts to call external applications via BioModule interface. BioModules perform sequence processing, taxonomy assignment, univariate modelling, and report generation.

biolockr icon biolockr

R package - the official R wrappers to interact with the BioLockJ java program from an R session.

blj_ext_modules icon blj_ext_modules

Additional modules that run as part of BioLockJ but are not part of the base program

blj_support icon blj_support

Fodor Lab support files + BioLockJ Test pipelines + Docker helper scripts

chicago-hospital-microbiome icon chicago-hospital-microbiome

A re-analysis of the data published as part of the hospital microbiome project, specifically the data from Lax et al. 2017.

htsjdk icon htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

hyperiondmx icon hyperiondmx

Files to control the DMX commands from the Artemis spaceship bridge simulator game to the Hyperion bridge.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.