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metincansiper avatar metincansiper commented on September 2, 2024

I think that this was required to be handled in 'iVis-at-Bilkent/sbgnviz.js#79'. However, I realized that previosuly multimers were not regarded as EPN's by mistake. I have fixed it now. I infer by the issue above that 'unspecified entity', 'simple chemical', 'macromolecule', 'nucleic acid feature', 'complex' and their multimers are EPN's. Is there any problem with my isEPN check. And is there still something wrong about this issue?

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fdurupinar avatar fdurupinar commented on September 2, 2024

My concern is about whether the targets of logic arcs can be logic operators or not. Currently, we can't define an operation such as (a AND b) OR ( c OR d) with an edge between AND and OR operators.

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ugurdogrusoz avatar ugurdogrusoz commented on September 2, 2024

The original issue iVis-at-Bilkent/sbgnviz.js#79 was missing the fact that a logical arc can be between two logical operators, not just between an EPN and a logical operator. Let's please add this as a valid interaction.

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metincansiper avatar metincansiper commented on September 2, 2024

I added the missing valid interaction.

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