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Baraka Stewart Mkumbe's Projects

ai_workshop icon ai_workshop

Data, tutorial, and lecture slides for building custom neural network models

ancestry_pipeline icon ancestry_pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

duphold icon duphold

don't get DUP'ed or DEL'ed by your putative SVs.

eig icon eig

Eigen tools by Nick Patterson and Alkes Price lab

gatk4-mitochondria-pipeline icon gatk4-mitochondria-pipeline

This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.

hail icon hail

Cloud-native genomic dataframes and batch computing

ldhat icon ldhat

Estimate recombination rates from population genetic data

memes icon memes

An R interface to the MEME Suite

mitovizr icon mitovizr

R package to plot Human Mitochondrial Variants from Dataframes, VCF or JSON files

mtdna icon mtdna

Characterization of mitochondrial DNA quantity and quality in the human aged and Alzheimer’s disease brain

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