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rvaser avatar rvaser commented on August 22, 2024

Hi Elena,
it is probably due to RAM shortage. How much memory does your machine have?

Best regards,
Robert

from racon.

elenasantidrian avatar elenasantidrian commented on August 22, 2024

The RAM is 64. Could that be the problem?
Best regards,

Elena

from racon.

rvaser avatar rvaser commented on August 22, 2024

Unfortunately, 64GB of memory will not be sufficient to run Racon with your input. You can try and split your assembled genome by contigs, run graphmap and Racon on each file separately and hope that it will fit into memory.

Best regards,
Robert

from racon.

elenasantidrian avatar elenasantidrian commented on August 22, 2024

Ok, thanks , I will try it that way.

Best regards,

Elena

from racon.

rvaser avatar rvaser commented on August 22, 2024

@elenasantidrian, racon 1.2.0 has a wrapper script to enable easier correction for large files (you can split target sequences to decrease memory consumption). Also, all racon versions beyond 1.0.0 should use less memory than version 0.5.0.

from racon.

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