Comments (1)
Alternatively, spec2nii works in one instance when instead of passing:
- spec2nii bruker -m FID 6/fid which gave an error as specified above
one issues:
- spec2nii bruker -m FID 6
where "6" is the directory containing the data. However in the other instance, in our case the "8" directory, issuing the command:
- spec2nii bruker -m FID 8 results in the following error:
spec2nii bruker -m FID 8/
Traceback (most recent call last):
File "/home/spectro/anaconda3/bin/spec2nii", line 10, in
sys.exit(main())
File "/home/spectro/anaconda3/lib/python3.7/site-packages/spec2nii/spec2nii.py", line 666, in main
spec2nii(*args)
File "/home/spectro/anaconda3/lib/python3.7/site-packages/spec2nii/spec2nii.py", line 283, in init
args.func(args)
File "/home/spectro/anaconda3/lib/python3.7/site-packages/spec2nii/spec2nii.py", line 635, in bruker
self.imageOut, self.fileoutNames = read_bruker(args)
File "/home/spectro/anaconda3/lib/python3.7/site-packages/spec2nii/bruker.py", line 44, in read_bruker
for data, orientation, dwelltime, meta, name in yield_bruker(args):
File "/home/spectro/anaconda3/lib/python3.7/site-packages/spec2nii/bruker.py", line 94, in yield_bruker
with dataset as d:
File "/home/spectro/anaconda3/lib/python3.7/site-packages/brukerapi/dataset.py", line 204, in enter
self.load()
File "/home/spectro/anaconda3/lib/python3.7/site-packages/brukerapi/dataset.py", line 272, in load
self.load_schema()
File "/home/spectro/anaconda3/lib/python3.7/site-packages/brukerapi/dataset.py", line 487, in load_schema
self._schema = SchemaFid(self)
File "/home/spectro/anaconda3/lib/python3.7/site-packages/brukerapi/schemas.py", line 73, in init
raise MissingProperty(property)
brukerapi.exceptions.MissingProperty: Dataset is missing the scheme_id property. We can offer some help, please contact us via https://github.com/isi-nmr/brukerapi-python
from brukerapi-python.
Related Issues (8)
- difference in storage and binary size in the 34th file of the pv601 datasets?
- Problem with loading FID HOT 1
- np.float HOT 3
- Can't read in complex 2dseq
- Two test errors due to request fixture issues
- Interest in man pages?
- Dataset is missing the scheme_id property. We can offer some help, please contact us via HOT 2
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from brukerapi-python.