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isabellebaker's Projects

behavioralsequences icon behavioralsequences

This repository contains my code to take a LabGym behavior output file in .xlsx format and find behavioral sequences. You can view and filter the resulting sequences within the app and then save them to an Excel file.

dynamicbackgroundremoval icon dynamicbackgroundremoval

Jupyter, Standalone Software Infrastructure, sample images, etc. to train a detectron2 mask-r-cnn model and use it to remove complex backgrounds from videos and images. Note: the final model is exported to torchscript (ts) format so it can be used generically outside of the detectron2 infrastructure, for instance in my standalone infrastructure

framegrabber icon framegrabber

Python UI to grab frames from a video. Allows for stepping forward, backward, and scrubbing through the video. Also provides the ability to associate a track pkl file generated by my dynamic background removal app and use it to identify frames needed for model refinement/retraining.

labgymsortinghat icon labgymsortinghat

Python app designed for use with samples (animation/contours) generated by my dynamic background remover app (or classic LabGym) and rapidly sort behavior samples into user defined category folders.

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