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app_skel

argon_models

A simple python API to build ARGON models with arbitrary population sizes and migration histories.

babysims

Run just enough simulations to show basic trends in your data

bioconda-recipes

Conda recipes for the bioconda channel.

boruta_py

Python implementations of the Boruta all-relevant feature selection method.

dunno

The "I have no idea" model.

easycgd

easysfs

Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style SFS for demographic analysis

ecologpt

fomo

tmp repo for holding fomo stuff

fsc2_scripts

Shell scripts for automating replicate runs of fastsimcoal2

gimmek

Highly optimized software for estimation of ancestry coefficients from genomic sequence data

gimmesad

Joint modelling of abundance and genetic diversity. An integrated model of population genetics and community ecology.

imemeba-bci

Biodiversity Change Index

isaacovercast.github.io

My personal website:

islands2030

lab-notebooks

lskscripts

A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if anything leaves in the future.

megamodel

One model to rule them all

microstructure

minimal-mistakes

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

momi2

Infer demographic history with the Moran model

msprime

A reimplementation of Hudson's classical ms simulator for modern data sets.

pied

A model of coevolving community abundance and phylogenetic birth/death processes.

playlist

porecamp.github.io

PoreCamp - a training bootcamp based on the Oxford Nanopore MinION

pta

Phylogeographic Temporal Analysis

pta-easternsnake

pta-galapagosgeckos

Jupyter notebooks for PTA analysis of co-distributed Galapagos Geckos RADSeq data.

pyrad

Assembly and analysis of RADseq data sets