Comments (6)
Hi @heralden is it possible to get this tool working. I would like to use it in the demo if possible. It would fit nicely and I have a small gene list that I know have genetic and physical interactions.
The tool is configured to be on, but it doesn't work on any gene list, no matter how small the list is (the one I am using has only 9 genes)
from bluegenes.
Seems to be this same issue: intermine/bluegenes-interaction-network#24
so I'm guessing it's failing on some aspect of Pombemine's model.
You can enable the EsyN viewer instead of the Gene Interaction Network on the production pombemine (login as Admin then select Tool in the top-right dropdown menu).
from bluegenes.
I dn't think the model for GI or PI was changed though.? They were loaded directly from BIoGRID?
from bluegenes.
I could use EsyN - but how do I configure that? It does not appear at the moment, but it has clearly appeared in previous iterations (see above screenshot). I can't see anything obvious in the tools configuration.
from bluegenes.
On the tools page, try searching for @intermine/bluegenes-esyn-viewer
. It should be under Available tools near the bottom of the page.
from bluegenes.
I missed that. Note: this view needs a key. You don't know which interactions are genetic and which are physical until you go to EsyN.
from bluegenes.
Related Issues (20)
- COnfigure contents of gene list HOT 1
- Front page "intermine for all" section
- Cannot always select from drop down HOT 1
- Better error message for saving a list with an existing name HOT 1
- Use summaryfields when displaying search results
- enrichment default should be to gene not allele HOT 4
- mine logo has wrong URL HOT 1
- Mine logo URL is hardcoded in nav.cljs rather than given by branding.images.logo HOT 2
- Use webconfig-model.xml headerconfig for report title HOT 4
- Do not use attribute of ref/coll of report page class for title
- Update Google analytics
- Add config var to remove widgets, enrichment and tools from query results page
- More custom tracking events
- Move enrichment panel below query results table
- Viewing interaction tools (various, availability and bugs) HOT 2
- Support React 18 createRoot in index.js HOT 1
- Permanent URL points to backing legacy mine, not Bluegenes. HOT 2
- Hide sections on homepage not working HOT 1
- Problems with list upload
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from bluegenes.