Code Monkey home page Code Monkey logo

Comments (6)

ValWood avatar ValWood commented on September 25, 2024

Hi @heralden is it possible to get this tool working. I would like to use it in the demo if possible. It would fit nicely and I have a small gene list that I know have genetic and physical interactions.

The tool is configured to be on, but it doesn't work on any gene list, no matter how small the list is (the one I am using has only 9 genes)

from bluegenes.

heralden avatar heralden commented on September 25, 2024

Seems to be this same issue: intermine/bluegenes-interaction-network#24
so I'm guessing it's failing on some aspect of Pombemine's model.

You can enable the EsyN viewer instead of the Gene Interaction Network on the production pombemine (login as Admin then select Tool in the top-right dropdown menu).

from bluegenes.

ValWood avatar ValWood commented on September 25, 2024

I dn't think the model for GI or PI was changed though.? They were loaded directly from BIoGRID?

from bluegenes.

ValWood avatar ValWood commented on September 25, 2024

I could use EsyN - but how do I configure that? It does not appear at the moment, but it has clearly appeared in previous iterations (see above screenshot). I can't see anything obvious in the tools configuration.

from bluegenes.

heralden avatar heralden commented on September 25, 2024

On the tools page, try searching for @intermine/bluegenes-esyn-viewer. It should be under Available tools near the bottom of the page.

from bluegenes.

ValWood avatar ValWood commented on September 25, 2024

I missed that. Note: this view needs a key. You don't know which interactions are genetic and which are physical until you go to EsyN.

from bluegenes.

Related Issues (20)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.