Comments (1)
kishorejaganathan
commented on August 14, 2024
Dear Lindsay,
We changed the default parameters during the update from v1.2.1 to v1.3 in order to be consistent with the precomputed files that we have provided. Moving forward, with the default parameters, deletions greater than 100nt will cause this issue (I will put in a patch to automatically take care of this gracefully during the next update). You have two options:
- Prefilter the files to remove all deletions greater than 100nt.
- Set the -D parameter to 500 or something large (the default was 500 before, it is 50 now). 2xD is the maximum deletion that can be tolerated by SpliceAI currently.
Let me know if this doesn't help.
Regards,
Kishore
from spliceai.
Related Issues (20)
- Lower Accuracy Than Introme HOT 1
- Training with additional Batch Normalization layer producing strange results HOT 1
- Trouble to launch SpliceAI with grch37 HOT 5
- spliceAI not giving output value while running using vep (Variant Ensemble Predictor) HOT 3
- Position of splice sites within an insertion HOT 1
- Training input shape HOT 1
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