Comments (6)
Hello,
it looks like a copy-paste error when converting algorithms from 2D to 3D...
thanks for reporting, we will check soon!
David
from morpholibj.
Well, after checking I realize the bug was alreadyu fixed in August (55e7080). Therefore, correct version will be available with next release!
from morpholibj.
Thank you for the fery fast answer and the good news. And when will the next release be? I can surely use other tools, but if it is very soon I'd better wait.
from morpholibj.
There is no official date for the next "big" release; we are currently working on several changes, so a new release could be available "soon"...
In the meanwhile, I have released a bug-fix release; you can download it here:
https://github.com/ijpb/MorphoLibJ/releases/tag/v1.4.3.1
(simply download the jar, and use it as replacement of previous MorphoLibJ jar in the ."../Fiji.app/plugins" directory)
from morpholibj.
Thank you, indeed it works now.
Your plugin is great. the distance transform watershed is very efficient for the segmentation of nuclei of various shape and intensity within tissue sections. And the possibilities for label edition are very handy: with merging and manual correction of shapes I manage to obtain a correct segmentation for all nuclei, which is quite remarkable.
I also appreciate a lot the documentation about the plugin, it is very clear to understand what the tools do. This is really not the case with some other plugins (I'm currently struggling with other ones for 3D analysis).
from morpholibj.
Thank you for your very positive feedback!
We are glad the library is useful and can be easily adopted by people. And yes, makng the documentation takes a lot of time, but is absolutely crucial for users!
from morpholibj.
Related Issues (20)
- Configure Analyze Regions HOT 14
- MorphoLibJ as a dependency versions conflict HOT 21
- croplabel() , set pixel/voxel size and origin of the cropped image HOT 3
- MorphoLibJ is on bioconda HOT 1
- measurements should contain an additional column with image calibration unit
- Fill holes in labels HOT 4
- Erode labels HOT 4
- Suggestion for Intensity Measurements and Analyze Regions commands HOT 1
- orientation features in 2D have different ranges
- enhance analysis of timelapse images HOT 2
- closing close to image boundary HOT 2
- plugin “Draw Table Values” should be scriptable
- Issue with the ‘Label Edition’ plugin
- Label Morphological Filter: Erosion Operation for touching labels HOT 7
- Remove Border Labels does not work on Virtual stacks
- MorpholibJ Draw Table Value plugin error HOT 1
- Using Distance Transform Watershed without a GUI / UI HOT 6
- "Fill Label Holes" plugin results in full-white image when applied to binary image
- Typo in MorphologicalSegmentation.java HOT 1
- Error when applying opening/closing with an ellipsoid structuring element HOT 4
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from morpholibj.