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all-atom-md-cap

Reproduction of David Burnell's PhD thesis work on CAP

antechamber-tutorial

Using Antechamber to Create LEaP Input Files for Simulating Sustiva (efavirenz)-RT complex using the General Amber Force Field

artificial-pdb

Artificial PDB structures for Molecular Dynamics research

artificial-pdb-coord

Elastic Network Model (ENM) applied to artificial in silico PDB structures.

braydoncoyer

My GitHub Profile README! Learn how to build it yourself by scrolling to the bottom of the README and following the link!

bsim

Agent-based modelling tool for bacterial populations in systems and synthetic biology

cellmodeller

GPU-accelerated multicellular modelling framework

comp-biophys-research-project

A descent project structure for making and sharing science work in Computational Biophysics.

cookie-cutter-research-project

An example repo for a research project

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

dapper-invoice

A billable-time invoice featuring style over substance

demo-superset

Demo project using Apache Superset and Spotify API.

dfi

Dynamic Flexibility Index -- Python Library for studying structural dynamics of proteins

diogorodrigues

dynallo-scov2-mpro

Data and code for Computational Analysis of Dynamic Allostery and Control in the SARS-CoV-2 Main Protease

eq

Agent-based modeling for E.coli

eutopia-academy-3

All-atom MD simulations (with a focus on DNA run in AMBER)

fitness_landscape_sampling

Data from Wagner 2023 GenotypeSamplingDeep

gro-lia

This is a version of GRO developed at LIA-UPM

hello-world

GitHub tutorial/

hpc-academy-2020

HPC Autumn Academy 2020 @ UoC

hpc-for-healthcare

HPC for Healthcare Workshop hosted by N8 CIR

hugo-icon

Icon theme for Hugo

hugo-website

A no-code, no-software and no-cost solution to publishing sophisticated web sites managed by non-technical people.

igordub

igordub.github.io

look-back

oist-rotation-bcu

Rotation project with Biological Complexity Unit @OIST in Term 1 AY 2022/23

oist-rotation-mbnu

Rotation project at Micro/Bio/Nanofluidics Unit @oist in Term 2 AY 2022/23

orthologous_gfp_fitness_peaks

Repo for data and code related to the scientific article by Somermeyer et al., 'Heterogeneity of the GFP fitness landscape and data-driven protein design' published in eLife 11 (2022), DOI: 10.7554/eLife.75842.