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atacseq

ATAC-seq peak-calling, QC and differential analysis pipeline

cnregionplot

A R script to plot the segment-level copy number data

cytoscape

GitHub clone of SVN repo http://chianti.ucsd.edu/svn/ (cloned by http://svn2github.com/). This repo is not updated anymore. Please read at http://piotr.gabryjeluk.pl/blog:svn2github-problems

deeprescore

DeepRescore: rescore PSMs leveraging deep learning-derived peptide features

dev

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endometrial_vs_ovarian_comparison

feser

feseR: Combining feature selection methods for analyzing omics data

genomicwidgets

git-demo

A simple git repository to show the git flow

javacode

maser

Mapping Alternative Splicing Events to pRoteins

minorantigen

msnbase

Base Classes and Functions for Mass Spectrometry and Proteomics

multiomicsviz

netsam

Network Seriation And Modularization R package

note

parsefasta

R script to parseFasta file into table

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

t-scan