hzm220 Goto Github PK

10x

atac-seq-pipeline

ENCODE ATAC-seq pipeline

atacseqqcworkshop

ATACseqQC tutorials for BioC 2019 workshop

bioawk

BWK awk modified for biological data

bioinfo

bootcamp.blog

bootcamp_blog

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

chip-seq-pipeline2

ENCODE ChIP-seq pipeline

combat.py

python / numpy / pandas / patsy version of ComBat for removing batch effects.

complete-python-3-bootcamp

Course Files for Complete Python 3 Bootcamp Course on Udemy

compsra

COMPSRA: a COMprehensive Platform for Small RNA-Seq data Analysis

cpython

The Python programming language

cuttag_tutorial

dolphinnext

A graphical user interface for distributed data processing of high throughput genomics

dosefinding

:exclamation: This is a read-only mirror of the CRAN R package repository. DoseFinding — Planning and Analyzing Dose Finding Experiments

dropbox-uploader

Dropbox Uploader is a BASH script which can be used to upload, download, list or delete files from Dropbox, an online file sharing, synchronization and backup service.

drug_synergy

synergy

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

isee2018

Code and manuscript files for the iSEE paper

kbet

An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.

lindel

monocle3

oasis2.0

Clean repo dude..Online Access Student Information System

orchestratingsinglecellanalysis

Content for the OSCA Book.

p

pharmasug-2023-how-git-practice

Supplemental materials for a 2023 PharmaSUG 90-minute Hands-on Training

pharmasug2023

planets

boot camp

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

rvdb

A reference viral database (RVDB)