hui-liu Goto Github PK

2016-summer-workshop

ISCB DC Area Regional Student Group - Summer 2016 Workshop

2018-03-06-ibioic

Teaching materials for 6-7th March 2018 delivery of introductory bioinformatics training course for IBioIC.

ampril-genomes

scripts for the project of seven thaliana genomes assembly

astral

Accurate Species TRee ALgorithm

awesome-alternative-splicing

Alternative splicing resource

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-php-zh_cn

一个PHP资源列表，内容包括：库、框架、模板、安全、代码分析、日志、第三方库、配置工具、Web 工具、书籍、电子书、经典博文等等

bad_mutations

Deleterious mutation prediction pipeline

bioinfo

Various bioinformatics tools

bioinformatics-scripts

biotools

A list of useful bioinformatics resources

build_custom_bsgenome_txdb

Build a custom BSgenome/TxDb R package

centurion

chimpipe

ChimPipe: Accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

clinker

Gene Fusion Visualiser

coovar

Co-occurring variant analyzer

cruk-autumn-school-2017

CRUK Bioinformatics Workshop September 2017

darts

Deep-learning Augmented RNA-seq analysis of Transcript Splicing

degeneracy

generate 0-fold and 4-fold sites

dnds

Calculate dN/dS ratio precisely (Ka/Ks) using a codon-by-codon counting method.

dose

:mask:Disease Ontology Semantic and Enrichment analysis

drosophila_indels

Barton and Zeng (2018) - Pipeline and scripts for popgen analysis of whole-genome drosophila data.

dupgene

A program to infer gene gain and loss in gene families with Maximum Parsimony principle

eqtl

TCGA LUAD eQTL project

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting...)

genefuse

Gene fusion detection and visualization

genotype_plot

A set of functions to visualise genotypes based on a VCF

gff3toolkit

Python programs for processing GFF3 files

gwas

Scripts for GWAS association and metaanalysis

hcluster

My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/