Comments (2)
twallema
commented on July 26, 2024
Hi Timothy, could you read thru #253 on using xarray as the primary simulation output and see its it's complementary to this issue?
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TimothyWillard
commented on July 26, 2024
Hi @twallema! Funny enough reading that issue and working on another issue combined spurred this thought. And when discussing this issue with @jcblemai I even mentioned the possibility of other IO formats (hence the folder driver idea or whatever we end up calling it). This setup would make it easier to just use CSV files for everything when working with sample/testing configs or potentially using netcdf for xarray objects in the future.
The first pass focus will be on centralizing the directory structure logic though.
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Related Issues (20)
- Allow merging with only one reviewer with code owner
- Complete The "Inference Model Output" Section In Gitbook Documentation HOT 2
- Integration of website/documentation/sample/code GitHub repos HOT 2
- Missing dependencies for installation of necessary R packages on Ubuntu 22.04 HOT 5
- Place link to documentation "Running locally in a conda environment" in a more easily-noticeable location
- Configurable Post-Processing HOT 1
- Reintroduce Dual Likelihood (Chimeric/Global) Parameter Inference To `gempyor`
- JSON Output Post-Processing Script For Use In Dashboards
- Missing `boto3` Dependency For `gempyor` HOT 1
- Error in inference_slot when the prefix is not "inference_all"
- Address Warnings Produced By `gempyor` Test Suite HOT 4
- Document, Test, Deprecate/Migrate `gempyor.utils` HOT 10
- `gempyor.utils.rolling_mean_pad` Performance Improvements HOT 2
- Structure of simulation output is not generalizable to n-dimensional epi models (n subpopulations) HOT 6
- Switch From Using Confuse to Pydantic For Config Parsing HOT 4
- Move hardcoded `percent_day_away=0.5` to config file HOT 2
- Configure issue templates for flepiMoP repo? HOT 4
- Website upgrades
- Mobility model only applied if more than one disease state in `proportional_to` HOT 1
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