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Repo for Physalia course Analysis of Single Cell RNA-Seq data
Code and data repository for the 2020 physalia course on single cell RNA sequencing.
The adaptive version of attractor algorithm.
Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.
Classify output of AmpliconArchitect to detect types of focal amplifications present
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
Website to host AmpliconSuite outputs, including AA outputs and resulting focal amplification classifications, such as ecDNA.
wrapping prepare AA, handling arguments, starting docker with correct reference files
Aggregates the results from AmpliconSuite
ASCAT R package
Source files for DREAM7 BCC models
Attractor finding algorithm
Bayesian mixture models for estimating and clustering cancer cell fractions
Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.
SV clustering
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.
What you need to process the Quarterly DepMap-Omics releases from Terra
Simulate ecDNA structures with user-specified properties.
Create "haplotype maps" of variants in order to use with Picardtools Crosscheck_Files utility, which allows for robust genotyping of functional genomic data.
Official code repository for GATK versions 4 and up
GLASS consortium
R pkg for Hierarchical Dirichlet Process
Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
List of IARC bioinformatics nextflow pipelines
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.