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append_metabolic

A scalable high-throughput metabolic and biogeochemical functional trait profiler

biopython

Official git repository for Biopython (originally converted from CVS)

cell_acdc

A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data

cellular-automata

Cellular Automata generator

cmseq

Set of utilities on sequences and BAM files

cobra

A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

coelho2021_gmgcv1

dgantt

Java Gantt Chart Library

easymicrobiomer

Using R language in microbiome analysis

genome

gunc

Python package for detection of chimerism and contamination in prokaryotic genomes.

hex_sweep

Hexagonal Minesweeper

iproep

kegg-manual

mantis

A package to annotate protein sequences

metasc

moeaframework

A Free and Open Source Java Framework for Multiobjective Optimization

opentims

Open-source C++ and Python module for opening binary timsTOF data files.

panaroo

An updated pipeline for pangenome investigation

pangenomics

Scripts and utilities for pangenomic/phylogenomic analysis of prokaryotic genomes. Scripts for the analysis of genomic features such as C-ARSC, N-ARSC, and intergenic spacer lengths are also included.

phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

popcogent

Microbial Populations as Clusters Of Gene Transfer

program0

0

prpgram1

pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

pymummer

handle pymummer delta file

python

All Algorithms implemented in Python

snakefmt

The uncompromising Snakemake code formatter

snakemags

snakemake

This is the development home of the workflow management system Snakemake. For general information, see