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hmutanqilong's Projects

activepathways icon activepathways

Integrative pathway enrichment analysis of multivariate omics data

awesome-jupyter icon awesome-jupyter

A curated list of awesome Jupyter projects, libraries and resources

awesome-mac icon awesome-mac

 Now we have become very big, Different from the original idea. Collect premium software in various categories.

awesome_chinese_medical_nlp icon awesome_chinese_medical_nlp

中文医学NLP公开资源整理：术语集/语料库/词向量/预训练模型/知识图谱/命名实体识别/QA/信息抽取/模型/论文/etc

batchqc icon batchqc

Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.

cblue icon cblue

中文医疗信息处理基准CBLUE: A Chinese Biomedical Language Understanding Evaluation Benchmark

cellprofiler icon cellprofiler

An open-source application for biological image analysis

chinese-bert-wwm icon chinese-bert-wwm

Pre-Training with Whole Word Masking for Chinese BERT（中文BERT-wwm系列模型）

chinese-clinical-ner icon chinese-clinical-ner

CCKS2019中文命名实体识别任务。从医疗文本中识别疾病和诊断、解剖部位、影像检查、实验室检验、手术和药物6种命名实体。现已实现基于jieba和AC自动机的baseline构建、基于BiLSTM和CRF的序列标住模型构建。bert的部分代码主要源于https://github.com/charles9n/bert-sklearn.git 感谢作者。 模型最终测试集得分0.81，还有较大改进空间。可以当做一个baseline。

cognoma icon cognoma

Putting machine learning in the hands of cancer biologists

d2l-zh icon d2l-zh

《动手学深度学习》：面向中文读者、能运行、可讨论。英文版即伯克利“深度学习导论”教材。

emagma-tutorial icon emagma-tutorial

A step by step guide on how to use eMAGMA, an approach to conducting eQTL informed gene-based tests.

epistat icon epistat

R packages and code for Epidemiology and Biostatistics, statistical learning

esl-cn icon esl-cn

The Elements of Statistical Learning (ESL)的中文翻译、代码实现及其习题解答。

examples-r icon examples-r

Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.

faers-data-toolkit icon faers-data-toolkit

Script tools for downloading, data preprocessing, data merging and standardizing for FDA Adverse Event Reporting System(FAERS) dataset.

fast-pytorch icon fast-pytorch

Pytorch Tutorial, Pytorch with Google Colab, Pytorch Implementations: CNN, RNN, DCGAN, Transfer Learning, Chatbot, Pytorch Sample Codes

gwas icon gwas

Scripts for GWAS association and metaanalysis

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