Dependencies are not pulled automatically about clodius HOT 1 CLOSED

clodius$ source activate clodius-debug
(clodius-debug) clodius$ pip install clodius
Collecting clodius
  Downloading https://files.pythonhosted.org/packages/eb/3c/36767437796d3e150af855be7c58c5eb6da1b51d87f7363ac4bf0fbf5a25/clodius-0.10.8.tar.gz (50kB)
     |████████████████████████████████| 51kB 2.9MB/s 
Collecting numpy (from clodius)
  Downloading https://files.pythonhosted.org/packages/ae/76/4a4c012bca5688881c18f6e04694d221b88daa5d38526a4df87d75711199/numpy-1.16.3-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (13.9MB)
     |████████████████████████████████| 13.9MB 8.5MB/s 
Collecting negspy (from clodius)
  Downloading https://files.pythonhosted.org/packages/35/fb/dcbbb8c07e028fb7d11be4b08d6219648293d39fed66c8a55d2750b9cb99/negspy-0.2.22.tar.gz (1.7MB)
     |████████████████████████████████| 1.7MB 19.1MB/s 
Collecting pysam (from clodius)
Collecting dask (from clodius)
  Downloading https://files.pythonhosted.org/packages/58/80/6059587dcf80821fbccdc1f06b6d3fd29b64c9b38fbf1ea42889460de3de/dask-1.2.2-py2.py3-none-any.whl (717kB)
     |████████████████████████████████| 727kB 12.3MB/s 
Collecting requests (from clodius)
  Downloading https://files.pythonhosted.org/packages/51/bd/23c926cd341ea6b7dd0b2a00aba99ae0f828be89d72b2190f27c11d4b7fb/requests-2.22.0-py2.py3-none-any.whl (57kB)
     |████████████████████████████████| 61kB 13.6MB/s 
Collecting h5py (from clodius)
  Using cached https://files.pythonhosted.org/packages/03/21/1cdf7fa7868528b35c1a08a770eb9334279574a8b5f1d7a2966dcec14e42/h5py-2.9.0-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Collecting pandas (from clodius)
  Downloading https://files.pythonhosted.org/packages/2a/67/0a59cb257c72bb837575ca0ddf5f0fe2a482e98209b7a1bed8cde68ddb46/pandas-0.24.2-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (16.3MB)
     |████████████████████████████████| 16.3MB 13.6MB/s 
Collecting slugid (from clodius)
  Using cached https://files.pythonhosted.org/packages/6f/f7/0e7d06fa6914e2694d9766a827409fef1000f7548ba869b2476ff5817d86/slugid-2.0.0-py2.py3-none-any.whl
Collecting sortedcontainers (from clodius)
  Using cached https://files.pythonhosted.org/packages/13/f3/cf85f7c3a2dbd1a515d51e1f1676d971abe41bba6f4ab5443240d9a78e5b/sortedcontainers-2.1.0-py2.py3-none-any.whl
Collecting cooler>=0.8.0 (from clodius)
  Using cached https://files.pythonhosted.org/packages/67/76/8847a645b0da6c1ea7fcba3e77cef1a16bb512025e4a70dc2829c516cc0e/cooler-0.8.5-py2.py3-none-any.whl
Collecting pybbi==0.2.0 (from clodius)
Collecting Click (from clodius)
  Using cached https://files.pythonhosted.org/packages/fa/37/45185cb5abbc30d7257104c434fe0b07e5a195a6847506c074527aa599ec/Click-7.0-py2.py3-none-any.whl
Collecting idna<2.9,>=2.5 (from requests->clodius)
  Using cached https://files.pythonhosted.org/packages/14/2c/cd551d81dbe15200be1cf41cd03869a46fe7226e7450af7a6545bfc474c9/idna-2.8-py2.py3-none-any.whl
Collecting chardet<3.1.0,>=3.0.2 (from requests->clodius)
  Using cached https://files.pythonhosted.org/packages/bc/a9/01ffebfb562e4274b6487b4bb1ddec7ca55ec7510b22e4c51f14098443b8/chardet-3.0.4-py2.py3-none-any.whl
Collecting urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 (from requests->clodius)
  Downloading https://files.pythonhosted.org/packages/39/ec/d93dfc69617a028915df914339ef66936ea976ef24fa62940fd86ba0326e/urllib3-1.25.2-py2.py3-none-any.whl (150kB)
     |████████████████████████████████| 153kB 9.7MB/s 
Requirement already satisfied: certifi>=2017.4.17 in /Users/chuck/anaconda3/envs/clodius-debug/lib/python3.6/site-packages (from requests->clodius) (2019.3.9)
Collecting six (from h5py->clodius)
  Using cached https://files.pythonhosted.org/packages/73/fb/00a976f728d0d1fecfe898238ce23f502a721c0ac0ecfedb80e0d88c64e9/six-1.12.0-py2.py3-none-any.whl
Collecting pytz>=2011k (from pandas->clodius)
  Downloading https://files.pythonhosted.org/packages/3d/73/fe30c2daaaa0713420d0382b16fbb761409f532c56bdcc514bf7b6262bb6/pytz-2019.1-py2.py3-none-any.whl (510kB)
     |████████████████████████████████| 512kB 15.7MB/s 
Collecting python-dateutil>=2.5.0 (from pandas->clodius)
  Using cached https://files.pythonhosted.org/packages/41/17/c62faccbfbd163c7f57f3844689e3a78bae1f403648a6afb1d0866d87fbb/python_dateutil-2.8.0-py2.py3-none-any.whl
Collecting multiprocess (from cooler>=0.8.0->clodius)
Collecting pyyaml (from cooler>=0.8.0->clodius)
Collecting asciitree (from cooler>=0.8.0->clodius)
Collecting cytoolz (from cooler>=0.8.0->clodius)
Collecting pypairix (from cooler>=0.8.0->clodius)
  Downloading https://files.pythonhosted.org/packages/5a/52/6e44173759dcdaee003cf668fe8764b468c5b698e58f09540953961e6d36/pypairix-0.3.7.tar.gz (65kB)
     |████████████████████████████████| 71kB 18.1MB/s 
Collecting scipy>=0.16 (from cooler>=0.8.0->clodius)
  Downloading https://files.pythonhosted.org/packages/81/ae/125c21f09b202c3009ad7d9fb0263fb7d6053813d4b67ccbbe4d65f7f53a/scipy-1.3.0-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (27.7MB)
     |████████████████████████████████| 27.7MB 12.8MB/s 
Collecting pyfaidx (from cooler>=0.8.0->clodius)
Collecting biopython (from cooler>=0.8.0->clodius)
  Using cached https://files.pythonhosted.org/packages/e3/ef/5325c1c28b11e459fadb8a2a42662d34c1cbabef93fd8c7cfb7b9e60a0ff/biopython-1.73-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Collecting dill>=0.2.9 (from multiprocess->cooler>=0.8.0->clodius)
Collecting toolz>=0.8.0 (from cytoolz->cooler>=0.8.0->clodius)
Requirement already satisfied: setuptools>=0.7 in /Users/chuck/anaconda3/envs/clodius-debug/lib/python3.6/site-packages (from pyfaidx->cooler>=0.8.0->clodius) (41.0.1)
Building wheels for collected packages: clodius, negspy, pypairix
  Building wheel for clodius (setup.py) ... done
  Stored in directory: /Users/chuck/Library/Caches/pip/wheels/21/23/91/6e66a8917cb41718cb6da1978937f924defa32de5bcecfbb52
  Building wheel for negspy (setup.py) ... done
  Stored in directory: /Users/chuck/Library/Caches/pip/wheels/52/31/d2/f22eba31db913014d6c18473cac0a8b93ab6cee737f4052712
  Building wheel for pypairix (setup.py) ... done
  Stored in directory: /Users/chuck/Library/Caches/pip/wheels/5d/c5/3d/b4d3a2f1c16fc4f5556e8d7891e448ef3701e2aabaa742d9f9
Successfully built clodius negspy pypairix
Installing collected packages: numpy, negspy, pysam, dask, idna, chardet, urllib3, requests, six, h5py, pytz, python-dateutil, pandas, slugid, sortedcontainers, dill, multiprocess, pyyaml, asciitree, toolz, cytoolz, pypairix, scipy, pyfaidx, biopython, Click, cooler, pybbi, clodius
Successfully installed Click-7.0 asciitree-0.3.3 biopython-1.73 chardet-3.0.4 clodius-0.10.8 cooler-0.8.5 cytoolz-0.9.0.1 dask-1.2.2 dill-0.2.9 h5py-2.9.0 idna-2.8 multiprocess-0.70.7 negspy-0.2.22 numpy-1.16.3 pandas-0.24.2 pybbi-0.2.0 pyfaidx-0.5.5.2 pypairix-0.3.7 pysam-0.15.2 python-dateutil-2.8.0 pytz-2019.1 pyyaml-5.1 requests-2.22.0 scipy-1.3.0 six-1.12.0 slugid-2.0.0 sortedcontainers-2.1.0 toolz-0.9.0 urllib3-1.25.2