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2012-01_stanford_cs228

Probabilistic Graphical Models

awesome-neuron-segmentation-in-em-images

A curated list of resources for 3D segmentation of neurites in EM images

cellclustersplittingapp

A tool used for splitting the clusters in cell segmentation

cellprofiler

An open-source application for biological image analysis

code_and_analysis_tools

deepem

Deep Learning for EM Connectomics

dl-based-tumor-classification

Deep Learning Based Tumor Type Classification Using Gene Expression Data

em-net

This repository is official implementation of "EM-net: Deep learning for electron microscopy image segmentation" on Google Colab.

ffn

Flood-Filling Networks for instance segmentation in 3d volumes.

imagej-legacy

keras

Deep Learning for humans

maxtree-processing-toolbox

medical-imaging-datasets

A list of Medical imaging datasets.

opengm

A C++ Library for Discrete Graphical Models

prmlt

Matlab code of machine learning algorithms in book PRML

pysim

A python package to simulate structural variation

rorpo

Ranking Operator Response of Path Openings

sparselab

synquant

A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.

uni-em-proofreading

A unified environment for DNN-based automated segmentation of neuronal EM images

waterz

Simple watershed and agglomeration library for affinity graphs.