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advntr

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

dnascan

DNAscan is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage.

dnascanv2

DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage

dnascanv2-1

dnascanv2_snakemake

DNAscan2 is a fast and efficient bioinformatics pipeline that allows for the analysis of DNA Next Generation sequencing data, requiring very little computational effort and memory usage. This is the Snakemake version which is of benefit for those in HPC environments wanting to execute DNAscan2 in a parallel fashion.

gatk-sv

hierarchicalclusteringals

Code used to replicate the clustering, cell composition and phenotype analysis in the hierarchical clustering paper.

m00a-snakemake

Snakemake workflow for executing GATK-SV Module00a on a local HPC facility via Slurm

manta

Structural variant and indel caller for mapped sequencing data

mifs

Parallelized Mutual Information based Feature Selection module.

mobster

For more details about Mobster please see

music

Multi-subject Single Cell Deconvolution