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Michael L Heuer's Projects

adam icon adam

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

adam-commands icon adam-commands

External commands in Java and Scala for ADAM: Genomic Data System. Apache 2 licensed.

adam-examples icon adam-examples

Examples in Java and Scala for ADAM: Genomic Data System. Apache 2 licensed.

adam-explorer icon adam-explorer

Interactive explorer for ADAM genomics data models. Apache 2 licensed.

adam-gfa icon adam-gfa

Graphical Fragment Assembly (GFA) support for ADAM. Licensed LGPL version 3 or later.

adam-pheno icon adam-pheno

Phenotypes for ADAM: Genomic Data System. Apache 2 licensed.

adam-plugins icon adam-plugins

External plugins in Java and Scala for ADAM: Genomic Data System. Apache 2 licensed.

akwf-free icon akwf-free

Adventure Kid Wave Forms are a collection of sampled one cycle waveforms for use in synthesizers or similar sound generators.

amidst icon amidst

Advanced Minecraft Interface and Data/Structure Tracking

artic icon artic

UNDER CONSTRUCTION: nf-core ARTIC field bioinformatics pipeline

avocado icon avocado

A Variant Caller, Distributed. Apache 2 licensed.

awesome-adam icon awesome-adam

Awesome list of applications that extend Big Data Genomics ADAM. CC0 licensed.

bcbio-nextgen icon bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

bcbio.variation icon bcbio.variation

Toolkit to analyze genomic variation data, built on the GATK with Clojure

bdg-convert icon bdg-convert

Conversions to and from Big Data Genomics Avro Formats

bdg-convert-ga4gh icon bdg-convert-ga4gh

Conversions between GA4GH Protobuf and Big Data Genomics Avro Formats. Apache 2 licensed.

bdg-formats icon bdg-formats

Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

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