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wikiselev avatar wikiselev commented on June 16, 2024

Hello,

Thanks, we are very glad you like scmap!

  1. When similarity score is NA it means that dropout_rate for this gene is either 0% or 100%.
  2. scmapCluster always returns a list with 3 items. If not, check that you using the latest version (1.1.5)
  3. scmap_scores is the value of the top residuals of the linear fit that is produced by the selectFeatures function.
  4. Yes, the order shouldn't change. If it does, please let me know.

Cheers,
Vlad

from scmap.

CodeInTheSkies avatar CodeInTheSkies commented on June 16, 2024

from scmap.

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